Welcome to LinuxCNC.org

arh ok typo on my part sorry !

change
addf pid.0.do-pid-calcs servo-thread
to
addf pid.x.do-pid-calcs servo-thread

same with chan 1 to y

just untick the sanity check for the 7i33 should work
and over ride the checks

are you using the 7i33 ? , if so set the pdm freq to 6mhz would get you round it too perhaps

that now gets

Print file information:
RUN_IN_PLACE=no
LINUXCNC_DIR=
LINUXCNC_BIN_DIR=/usr/bin
LINUXCNC_TCL_DIR=/usr/lib/tcltk/linuxcnc
LINUXCNC_SCRIPT_DIR=
LINUXCNC_RTLIB_DIR=/usr/realtime-2.6.32-122-rtai/modules/linuxcnc
LINUXCNC_CONFIG_DIR=
LINUXCNC_LANG_DIR=/usr/share/linuxcnc/tcl/msgs
INIVAR=inivar
HALCMD=halcmd
LINUXCNC_EMCSH=/usr/bin/wish8.5
LINUXCNC - 2.5.0
Machine configuration directory is '/home/profiler/linuxcnc/configs/my_EMC_machine-1'
Machine configuration file is 'my_EMC_machine.ini'
INIFILE=/home/profiler/linuxcnc/configs/my_EMC_machine-1/my_EMC_machine.ini
PARAMETER_FILE=emc.var
TASK=milltask
HALUI=halui
DISPLAY=axis
Starting LinuxCNC...
Starting LinuxCNC server program: linuxcncsvr
Loading Real Time OS, RTAPI, and HAL_LIB modules
Starting LinuxCNC IO program: io
Starting HAL User Interface program: halui
Shutting down and cleaning up LinuxCNC...
Running HAL shutdown script
Killing task linuxcncsvr, PID=2174
Removing HAL_LIB, RTAPI, and Real Time OS modules
Removing NML shared memory segments
Cleanup done

Debug file information:
Can not find -sec MOT -var MOT -num 1
Can not find -sec IO -var IO -num 1
Can not find -sec LINUXCNC -var NML_FILE -num 1
Can not find -sec EMC -var NML_FILE -num 1
my_EMC_machine.hal:138: Pin 'pid.y.feedback' was already linked to signal 'y-pos-fb'
2174
PID TTY STAT TIME COMMAND
Stopping realtime threads
Unloading hal components

Kernel message information:
[ 4040.857344] I-pipe: Domain RTAI registered.
[ 4040.857358] RTAI[hal]: <3.8.1> mounted over IPIPE-NOTHREADS 2.6-03.
[ 4040.857363] RTAI[hal]: compiled with gcc version 4.4.3 (Ubuntu 4.4.3-4ubuntu5) .
[ 4040.857440] RTAI[hal]: mounted (IPIPE-NOTHREADS, IMMEDIATE (INTERNAL IRQs DISPATCHED), ISOL_CPUS_MASK: 0).
[ 4040.857445] PIPELINE layers:
[ 4040.857451] fab33e20 9ac15d93 RTAI 200
[ 4040.857456] c085cb20 0 Linux 100
[ 4040.904802] RTAI[malloc]: global heap size = 2097152 bytes, <BSD>.
[ 4040.905095] RTAI[sched]: IMMEDIATE, MP, USER/KERNEL SPACE: <with RTAI OWN KTASKs>, kstacks pool size = 524288 bytes.
[ 4040.905108] RTAI[sched]: hard timer type/freq = APIC/12500268(Hz); default timing: periodic; linear timed lists.
[ 4040.905116] RTAI[sched]: Linux timer freq = 250 (Hz), TimeBase freq = 1800248000 hz.
[ 4040.905121] RTAI[sched]: timer setup = 999 ns, resched latency = 2944 ns.
[ 4040.905250] RTAI[usi]: enabled.
[ 4041.002602] RTAI[math]: loaded.
[ 4041.129051] hm2: loading Mesa HostMot2 driver version 0.15
[ 4041.134444] hm2_pci: loading Mesa AnyIO HostMot2 driver version 0.7
[ 4041.134492] hm2_pci: discovered 5i20 at 0000:05:00.0
[ 4041.134610] hm2_5i20.0: firmware: requesting hm2/5i20/SVST8_4.BIT
[ 4041.310638] hm2/hm2_5i20.0: 72 I/O Pins used:
[ 4041.310649] hm2/hm2_5i20.0: IO Pin 000 (P2-01): Encoder #1, pin B (Input)
[ 4041.310657] hm2/hm2_5i20.0: IO Pin 001 (P2-03): Encoder #1, pin A (Input)
[ 4041.310663] hm2/hm2_5i20.0: IO Pin 002 (P2-05): Encoder #0, pin B (Input)
[ 4041.310670] hm2/hm2_5i20.0: IO Pin 003 (P2-07): Encoder #0, pin A (Input)
[ 4041.310677] hm2/hm2_5i20.0: IO Pin 004 (P2-09): Encoder #1, pin Index (Input)
[ 4041.310684] hm2/hm2_5i20.0: IO Pin 005 (P2-11): Encoder #0, pin Index (Input)
[ 4041.310691] hm2/hm2_5i20.0: IO Pin 006 (P2-13): PWMGen #1, pin Out0 (PWM or Up) (Output)
[ 4041.310699] hm2/hm2_5i20.0: IO Pin 007 (P2-15): PWMGen #0, pin Out0 (PWM or Up) (Output)
[ 4041.310706] hm2/hm2_5i20.0: IO Pin 008 (P2-17): PWMGen #1, pin Out1 (Dir or Down) (Output)
[ 4041.310714] hm2/hm2_5i20.0: IO Pin 009 (P2-19): PWMGen #0, pin Out1 (Dir or Down) (Output)
[ 4041.310721] hm2/hm2_5i20.0: IO Pin 010 (P2-21): PWMGen #1, pin Not-Enable (Output)
[ 4041.310729] hm2/hm2_5i20.0: IO Pin 011 (P2-23): PWMGen #0, pin Not-Enable (Output)
[ 4041.310736] hm2/hm2_5i20.0: IO Pin 012 (P2-25): Encoder #3, pin B (Input)
[ 4041.310742] hm2/hm2_5i20.0: IO Pin 013 (P2-27): Encoder #3, pin A (Input)
[ 4041.310749] hm2/hm2_5i20.0: IO Pin 014 (P2-29): Encoder #2, pin B (Input)
[ 4041.310756] hm2/hm2_5i20.0: IO Pin 015 (P2-31): Encoder #2, pin A (Input)
[ 4041.310763] hm2/hm2_5i20.0: IO Pin 016 (P2-33): Encoder #3, pin Index (Input)
[ 4041.310770] hm2/hm2_5i20.0: IO Pin 017 (P2-35): Encoder #2, pin Index (Input)
[ 4041.310777] hm2/hm2_5i20.0: IO Pin 018 (P2-37): PWMGen #3, pin Out0 (PWM or Up) (Output)
[ 4041.310785] hm2/hm2_5i20.0: IO Pin 019 (P2-39): PWMGen #2, pin Out0 (PWM or Up) (Output)
[ 4041.310792] hm2/hm2_5i20.0: IO Pin 020 (P2-41): PWMGen #3, pin Out1 (Dir or Down) (Output)
[ 4041.310800] hm2/hm2_5i20.0: IO Pin 021 (P2-43): PWMGen #2, pin Out1 (Dir or Down) (Output)
[ 4041.310808] hm2/hm2_5i20.0: IO Pin 022 (P2-45): PWMGen #3, pin Not-Enable (Output)
[ 4041.310815] hm2/hm2_5i20.0: IO Pin 023 (P2-47): PWMGen #2, pin Not-Enable (Output)
[ 4041.310821] hm2/hm2_5i20.0: IO Pin 024 (P3-01): IOPort
[ 4041.310827] hm2/hm2_5i20.0: IO Pin 025 (P3-03): IOPort
[ 4041.310833] hm2/hm2_5i20.0: IO Pin 026 (P3-05): IOPort
[ 4041.310838] hm2/hm2_5i20.0: IO Pin 027 (P3-07): IOPort
[ 4041.310844] hm2/hm2_5i20.0: IO Pin 028 (P3-09): IOPort
[ 4041.310850] hm2/hm2_5i20.0: IO Pin 029 (P3-11): IOPort
[ 4041.310856] hm2/hm2_5i20.0: IO Pin 030 (P3-13): IOPort
[ 4041.310861] hm2/hm2_5i20.0: IO Pin 031 (P3-15): IOPort
[ 4041.310867] hm2/hm2_5i20.0: IO Pin 032 (P3-17): IOPort
[ 4041.310873] hm2/hm2_5i20.0: IO Pin 033 (P3-19): IOPort
[ 4041.310878] hm2/hm2_5i20.0: IO Pin 034 (P3-21): IOPort
[ 4041.310884] hm2/hm2_5i20.0: IO Pin 035 (P3-23): IOPort
[ 4041.310890] hm2/hm2_5i20.0: IO Pin 036 (P3-25): IOPort
[ 4041.310895] hm2/hm2_5i20.0: IO Pin 037 (P3-27): IOPort
[ 4041.310901] hm2/hm2_5i20.0: IO Pin 038 (P3-29): IOPort
[ 4041.310907] hm2/hm2_5i20.0: IO Pin 039 (P3-31): IOPort
[ 4041.310913] hm2/hm2_5i20.0: IO Pin 040 (P3-33): IOPort
[ 4041.310918] hm2/hm2_5i20.0: IO Pin 041 (P3-35): IOPort
[ 4041.310924] hm2/hm2_5i20.0: IO Pin 042 (P3-37): IOPort
[ 4041.310930] hm2/hm2_5i20.0: IO Pin 043 (P3-39): IOPort
[ 4041.310936] hm2/hm2_5i20.0: IO Pin 044 (P3-41): IOPort
[ 4041.310941] hm2/hm2_5i20.0: IO Pin 045 (P3-43): IOPort
[ 4041.310947] hm2/hm2_5i20.0: IO Pin 046 (P3-45): IOPort
[ 4041.310953] hm2/hm2_5i20.0: IO Pin 047 (P3-47): IOPort
[ 4041.310959] hm2/hm2_5i20.0: IO Pin 048 (P4-01): IOPort
[ 4041.310965] hm2/hm2_5i20.0: IO Pin 049 (P4-03): IOPort
[ 4041.310970] hm2/hm2_5i20.0: IO Pin 050 (P4-05): IOPort
[ 4041.310976] hm2/hm2_5i20.0: IO Pin 051 (P4-07): IOPort
[ 4041.310982] hm2/hm2_5i20.0: IO Pin 052 (P4-09): IOPort
[ 4041.310987] hm2/hm2_5i20.0: IO Pin 053 (P4-11): IOPort
[ 4041.310993] hm2/hm2_5i20.0: IO Pin 054 (P4-13): IOPort
[ 4041.310999] hm2/hm2_5i20.0: IO Pin 055 (P4-15): IOPort
[ 4041.311005] hm2/hm2_5i20.0: IO Pin 056 (P4-17): IOPort
[ 4041.311010] hm2/hm2_5i20.0: IO Pin 057 (P4-19): IOPort
[ 4041.311016] hm2/hm2_5i20.0: IO Pin 058 (P4-21): IOPort
[ 4041.311022] hm2/hm2_5i20.0: IO Pin 059 (P4-23): IOPort
[ 4041.311027] hm2/hm2_5i20.0: IO Pin 060 (P4-25): IOPort
[ 4041.311033] hm2/hm2_5i20.0: IO Pin 061 (P4-27): IOPort
[ 4041.311039] hm2/hm2_5i20.0: IO Pin 062 (P4-29): IOPort
[ 4041.311045] hm2/hm2_5i20.0: IO Pin 063 (P4-31): IOPort
[ 4041.311050] hm2/hm2_5i20.0: IO Pin 064 (P4-33): IOPort
[ 4041.311056] hm2/hm2_5i20.0: IO Pin 065 (P4-35): IOPort
[ 4041.311062] hm2/hm2_5i20.0: IO Pin 066 (P4-37): IOPort
[ 4041.311067] hm2/hm2_5i20.0: IO Pin 067 (P4-39): IOPort
[ 4041.311073] hm2/hm2_5i20.0: IO Pin 068 (P4-41): IOPort
[ 4041.311079] hm2/hm2_5i20.0: IO Pin 069 (P4-43): IOPort
[ 4041.311084] hm2/hm2_5i20.0: IO Pin 070 (P4-45): IOPort
[ 4041.311090] hm2/hm2_5i20.0: IO Pin 071 (P4-47): IOPort
[ 4041.311314] hm2/hm2_5i20.0: registered
[ 4041.311320] hm2_5i20.0: initialized AnyIO board at 0000:05:00.0
[ 4041.889571] hm2_5i20.0: dropping AnyIO board at 0000:05:00.0
[ 4041.889584] hm2/hm2_5i20.0: unregistered
[ 4041.889657] hm2_pci: driver unloaded
[ 4041.894601] hm2: unloading
[ 4041.963793] RTAI[math]: unloaded.
[ 4042.014346] SCHED releases registered named ALIEN RTGLBH
[ 4042.044428] RTAI[malloc]: unloaded.
[ 4042.144026] RTAI[sched]: unloaded (forced hard/soft/hard transitions: traps 0, syscalls 0).
[ 4042.147998] I-pipe: Domain RTAI unregistered.
[ 4042.148118] RTAI[hal]: unmounted.


thanks for you help up too pres

net y-pos-fb <= hm2_5i20.0.encoder.00.position
net y-pos-fb => pid.y.feedback
net y-pos-fb => axis.1.motor-pos-fb
net y-index-enable axis.1.index-enable <=> hm2_5i20.0.encoder.00.index-enable

around line 135 you should find a typo as ypos-fb etc they need changing as per above

also as a note in your ini file you have
[RS274NGC]
PARAMETER_FILE = emc.var

it may not make any difference but that also requires a name change
[RS274NGC]
PARAMETER_FILE = linuxcnc.var

have you changed file locations ?
the following ...
Debug file information:
Can not find -sec MOT -var MOT -num 1
Can not find -sec IO -var IO -num 1
Can not find -sec LINUXCNC -var NML_FILE -num 1
Can not find -sec EMC -var NML_FILE -num 1

these may be part of the parameter file as mentioned

i have changed and now axis will start but

i get this when trying the calibration

can't read "ininamearray(0)": no such variable
can't read "ininamearray(0)": no such variable
while executing
"set ininamearray($axisentry)"
(procedure "iniTuneButtonpress" line 34)
invoked from within
"iniTuneButtonpress test"
invoked from within
".main.top.fpage0.buttons.test invoke"
("uplevel" body line 1)
invoked from within
"uplevel #0

"
(procedure "tk::ButtonUp" line 22)
invoked from within
"tk::ButtonUp .main.top.fpage0.buttons.test"
(command bound to event)

check your parameter file .. as per the last message
also uncomment the z axis lines in your INI file