By the time I read your message I'd already taped four of them and the board was sitting on an even keel

. I'm going to get in touch with the Mini-Box people here in Oz and see what they've got to say. Even though I've tracked down the ATX 24-pin pinouts I'm inclined not to probe them with the multimeter in case Mini-Box claim that I shorted something out myself (and I do in fact make a mistake and short something out and blow it up).
Here's some snaps to prove that the monitor and D525 are working:
From left to right, top to bottom: installing Ubuntu 10.04 (finally!); Downloading LinuxCNC 2.5 manually, since I seem to have grabbed the distro without EMC 2.4; The latency program running, with a few other things happening in the background.
I ramped my activity up later by installing all sorts of packages that I like to have on a Linux machine (even one that won't be used for much except the CNC, and the quite reasonable 17015 ns in the last snap eventually became 31872 at last look - that's several hours of running with glxgears (running as a backgrounded xterm process), a number of open pdfs, a bit of web downloading, quite a lot of apt-getting, and a zombie installation process (from running the ayam install via sudo) that I can't find and therefore can't attempt to nuke. Once I've finished typing here I'll reboot the D525 and try the latency sniffer again without the zombie: when the thing is being used as a mill it will be the only thing running other than essential system processes (i.e., no games ; ).
I'll read through the docs about ram-disks and the SMI stuff when I've had a good rest. At the moment the heatsink sitting on the Atom is warm, but certainly not too hot to touch. I'm keeping an eye (as it were) on it, though.
Once again, many thanks for your help, guys. I really appreciate it

.